pappso::FilterRemoveC13 Class Reference

#include <filterremovec13.h>

Inheritance diagram for pappso::FilterRemoveC13:

Public Member Functions
	FilterRemoveC13 (PrecisionPtr precision_ptr)
	FilterRemoveC13 (const FilterRemoveC13 &other)
virtual	~FilterRemoveC13 ()
Trace &	filter (Trace &data_points) const override
Public Member Functions inherited from pappso::FilterInterface
virtual	~FilterInterface ()

Private Member Functions
bool	notExcluded (std::vector< std::pair< double, double > > &exclusionMassMap, double mass) const
void	addExclusionMap (std::vector< std::pair< double, double > > &exclusionMassMap, double mass) const

Private Attributes
double	m_diffC12C13_z1
double	m_diffC12C13_z2
PrecisionPtr	m_precisionPtr

Detailed Description

Definition at line 44 of file filterremovec13.h.

Constructor & Destructor Documentation

FilterRemoveC13() [1/2]

FilterRemoveC13::FilterRemoveC13

(

PrecisionPtr

precision_ptr

)

Default constructor

Definition at line 32 of file filterremovec13.cpp.

                                                           : m_precisionPtr(precision_ptr)
{
  m_diffC12C13_z1 = DIFFC12C13;
  m_diffC12C13_z2 = DIFFC12C13 / 2;
}

References pappso::DIFFC12C13(), m_diffC12C13_z1, m_diffC12C13_z2, and m_precisionPtr.

Referenced by FilterRemoveC13().

FilterRemoveC13() [2/2]

FilterRemoveC13::FilterRemoveC13

(

const FilterRemoveC13 &

other

)

Copy constructor

Parameters

other

TODO

Definition at line 38 of file filterremovec13.cpp.

  : m_precisionPtr(other.m_precisionPtr)
{
  m_diffC12C13_z1 = DIFFC12C13;
  m_diffC12C13_z2 = DIFFC12C13 / 2;
}

References FilterRemoveC13(), pappso::DIFFC12C13(), m_diffC12C13_z1, m_diffC12C13_z2, and m_precisionPtr.

~FilterRemoveC13()

FilterRemoveC13::~FilterRemoveC13 ( )

virtual

Destructor

Definition at line 45 of file filterremovec13.cpp.

{
}

Member Function Documentation

addExclusionMap()

void pappso::FilterRemoveC13::addExclusionMap ( std::vector< std::pair< double, double > > & exclusionMassMap, double mass ) const

private

Definition at line 91 of file filterremovec13.cpp.

{
  MzRange range1(mass + m_diffC12C13_z1, m_precisionPtr);
 
  exclusionMassMap.push_back(std::pair<double, double>(range1.lower(), range1.upper()));
 
 
  MzRange range2(mass + m_diffC12C13_z2, m_precisionPtr);
 
  exclusionMassMap.push_back(std::pair<double, double>(range2.lower(), range2.upper()));
}

References pappso::MzRange::lower(), m_diffC12C13_z1, m_diffC12C13_z2, m_precisionPtr, and pappso::MzRange::upper().

Referenced by filter().

filter()

Trace & FilterRemoveC13::filter ( Trace & data_points ) const

overridevirtual

Implements pappso::FilterInterface.

Definition at line 50 of file filterremovec13.cpp.

{
 
  std::vector<std::pair<double, double>> exclusionMassMap;
  // qDebug() << data_points.size();
  std::sort(data_points.begin(), data_points.end(), [](const DataPoint &a, const DataPoint &b) {
    return (a.y > b.y);
  });
 
  Trace new_trace;
 
  for(auto &data_point : data_points)
    {
      if(notExcluded(exclusionMassMap, data_point.x))
        {
          new_trace.push_back(data_point);
        }
      addExclusionMap(exclusionMassMap, data_point.x);
    }
  new_trace.sortX();
  // qDebug() << new_trace.size();
  data_points = std::move(new_trace);
  // qDebug() << data_points.size();
  return data_points;
}

References pappso::a, addExclusionMap(), pappso::b, notExcluded(), and pappso::Trace::sortX().

notExcluded()

bool pappso::FilterRemoveC13::notExcluded ( std::vector< std::pair< double, double > > & exclusionMassMap, double mass ) const

private

Definition at line 77 of file filterremovec13.cpp.

{
  for(auto &mass_range : exclusionMassMap)
    {
      if((mass_range.first <= mass) && (mass_range.second >= mass))
        {
          return false;
        }
    }
  return true;
}

Referenced by filter().

Member Data Documentation

m_diffC12C13_z1

double pappso::FilterRemoveC13::m_diffC12C13_z1

private

Definition at line 74 of file filterremovec13.h.

Referenced by FilterRemoveC13(), FilterRemoveC13(), and addExclusionMap().

m_diffC12C13_z2

double pappso::FilterRemoveC13::m_diffC12C13_z2

private

Definition at line 75 of file filterremovec13.h.

Referenced by FilterRemoveC13(), FilterRemoveC13(), and addExclusionMap().

m_precisionPtr

PrecisionPtr pappso::FilterRemoveC13::m_precisionPtr

private

Definition at line 76 of file filterremovec13.h.

Referenced by FilterRemoveC13(), FilterRemoveC13(), and addExclusionMap().

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The documentation for this class was generated from the following files:

• pappsomspp/core/processing/filters/filterremovec13.h
• pappsomspp/core/processing/filters/filterremovec13.cpp