pappso::cbor::mzcbor::Precursor Struct Reference

#include <precursor.h>

Public Member Functions
void	fromCbor (CborStreamReader &reader)

Public Attributes
QString	spectrumRef
std::map< QString, pappso::cbor::mzcbor::CvParam >	selectedIonListCvParamMap
std::vector< SelectedIon >	selectedIonList

Detailed Description

Todo

write docs

Definition at line 54 of file precursor.h.

Member Function Documentation

fromCbor()

void pappso::cbor::mzcbor::Precursor::fromCbor

(

CborStreamReader &

reader

)

Definition at line 121 of file precursor.cpp.

{
 
  QString txt_value;
  reader.enterContainer();
  qDebug() << txt_value;
  while(reader.hasNext() && (!reader.isInvalid()))
    {
      if(reader.isString())
        {
          if(reader.decodeString(txt_value))
            {
              qDebug() << txt_value;
              if(txt_value == "cvParam")
                {
                  // precursorListCvParamMap = CvParam::getCvParamsMapFromCbor(reader);
                  reader.next();
                }
              else if(txt_value == "isolationWindow")
                {
                  reader.next();
                }
              else if(txt_value == "selectedIonList")
                {
 
                  reader.enterContainer();
 
                  while(reader.hasNext() && (!reader.isInvalid()))
                    {
                      if(reader.isString())
                        {
                          if(reader.decodeString(txt_value))
                            {
                              qDebug() << txt_value;
                              if(txt_value == "cvParam")
                                {
                                  selectedIonListCvParamMap =
                                    CvParam::getCvParamsMapFromCbor(reader);
                                }
                              else if(txt_value == "selectedIon")
                                {
 
                                  reader.enterContainer(); // array
 
                                  while(reader.hasNext() && (!reader.isInvalid()))
                                    {
                                      SelectedIon selected_ion;
                                      selected_ion.fromCbor(reader);
                                      selectedIonList.emplace_back(selected_ion);
                                    }
                                  reader.leaveContainer(); // array
                                }
                              else
                                {
                                  reader.next();
                                }
                            }
                          else
                            {
                              reader.next();
                            }
                        }
                      else
                        {
                          reader.next();
                        }
                    }
                  reader.leaveContainer();
                }
              else if(txt_value == "activation")
                {
                  qDebug();
                  reader.next();
                }
 
              else if(txt_value == "spectrumRef")
                {
                  reader.decodeString(txt_value);
                  qDebug() << txt_value;
                  spectrumRef = txt_value;
                }
              else
                {
                  reader.next();
                }
            }
          else
            {
              reader.next();
            }
        }
      else
        {
          reader.next();
        }
    }
  reader.leaveContainer();
}

References pappso::cbor::CborStreamReader::decodeString(), pappso::cbor::mzcbor::SelectedIon::fromCbor(), pappso::cbor::mzcbor::CvParam::getCvParamsMapFromCbor(), selectedIonList, selectedIonListCvParamMap, and spectrumRef.

Referenced by pappso::cbor::mzcbor::Spectrum::fromCbor().

Member Data Documentation

selectedIonList

std::vector<SelectedIon> pappso::cbor::mzcbor::Precursor::selectedIonList

Definition at line 62 of file precursor.h.

Referenced by fromCbor().

selectedIonListCvParamMap

std::map<QString, pappso::cbor::mzcbor::CvParam> pappso::cbor::mzcbor::Precursor::selectedIonListCvParamMap

Definition at line 60 of file precursor.h.

Referenced by fromCbor().

spectrumRef

QString pappso::cbor::mzcbor::Precursor::spectrumRef

Definition at line 58 of file precursor.h.

Referenced by fromCbor().

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The documentation for this struct was generated from the following files:

• pappsomspp/core/processing/cbor/mzcbor/precursor.h
• pappsomspp/core/processing/cbor/mzcbor/precursor.cpp