pappso::cbor::mzcbor::SelectedIon Struct Reference

#include <precursor.h>

Public Member Functions
void	fromCbor (CborStreamReader &reader)
int	getChargeState () const
qint64	getIntensity () const
double	getMz () const

Public Attributes
std::map< QString, pappso::cbor::mzcbor::CvParam >	cvParamMap

Detailed Description

Definition at line 41 of file precursor.h.

Member Function Documentation

fromCbor()

void pappso::cbor::mzcbor::SelectedIon::fromCbor

(

CborStreamReader &

reader

)

Definition at line 34 of file precursor.cpp.

{
  QString txt_value;
  reader.enterContainer();
  qDebug() << txt_value;
  while(reader.hasNext() && (!reader.isInvalid()))
    {
      if(reader.isString())
        {
          if(reader.decodeString(txt_value))
            {
              qDebug() << txt_value;
              if(txt_value == "cvParam")
                {
                  cvParamMap = CvParam::getCvParamsMapFromCbor(reader);
                  // reader.next();
                }
              else
                {
                  reader.next();
                }
            }
          else
            {
              reader.next();
            }
        }
      else
        {
          reader.next();
        }
    }
  reader.leaveContainer();
}

References cvParamMap, pappso::cbor::CborStreamReader::decodeString(), and pappso::cbor::mzcbor::CvParam::getCvParamsMapFromCbor().

Referenced by pappso::cbor::mzcbor::Precursor::fromCbor().

getChargeState()

int pappso::cbor::mzcbor::SelectedIon::getChargeState

(

)

const

Definition at line 71 of file precursor.cpp.

{
 
  //      <cvParam cvRef="MS" accession="MS:1000041" value="3" name="charge state" />
 
  auto it = cvParamMap.find("MS:1000041");
  if(it == cvParamMap.end())
    {
      throw pappso::ExceptionNotFound(
        QObject::tr("Charge state not found in SelectedIon cvParam map"));
    }
  qDebug() << it->first << " " << it->second.valueInt;
  return it->second.valueInt;
}

References cvParamMap.

getIntensity()

qint64 pappso::cbor::mzcbor::SelectedIon::getIntensity

(

)

const

Definition at line 87 of file precursor.cpp.

{
 
  //         <cvParam cvRef="MS" accession="MS:1000042" value="248032.25" name="peak intensity"
  //         unitAccession="MS:1000131" unitName="number of detector counts" unitCvRef="MS" />
 
  auto it = cvParamMap.find("MS:1000042");
  if(it == cvParamMap.end())
    {
      throw pappso::ExceptionNotFound(
        QObject::tr("Intensity not found in SelectedIon cvParam map"));
    }
  qDebug() << it->first << " " << it->second.valueInt;
  return it->second.valueInt;
}

References cvParamMap.

getMz()

double pappso::cbor::mzcbor::SelectedIon::getMz

(

)

const

Definition at line 104 of file precursor.cpp.

{
 
  //     <cvParam cvRef="MS" accession="MS:1000744" value="506.2513" name="selected ion m/z"
  //     unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
  auto it = cvParamMap.find("MS:1000744");
  if(it == cvParamMap.end())
    {
      throw pappso::ExceptionNotFound(QObject::tr("m/z not found in SelectedIon cvParam map"));
    }
  qDebug() << it->first << " " << it->second.valueDouble;
  return it->second.valueDouble;
}

References cvParamMap.

Member Data Documentation

cvParamMap

std::map<QString, pappso::cbor::mzcbor::CvParam> pappso::cbor::mzcbor::SelectedIon::cvParamMap

Definition at line 49 of file precursor.h.

Referenced by fromCbor(), getChargeState(), getIntensity(), and getMz().

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The documentation for this struct was generated from the following files:

• pappsomspp/core/processing/cbor/mzcbor/precursor.h
• pappsomspp/core/processing/cbor/mzcbor/precursor.cpp